Collections / Spatial transcriptome analysis for placental tissue of preeclampsia
Spatial transcriptome analysis for placental tissue of preeclampsia
Preeclampsia (PE) is a major pregnancy complication leading to maternal and neonatal mortality. To investigate the spatial gene expression profile of preeclampsia, we performed the Visium FFPE spatial transcriptome analysis.
Datasets2
Size~351 MB
AssayVisium
Samplehuman · placenta
KindComparison
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Python · lamindb
import lamindb as ln
import spatialdata as sd
coll = ln.Collection.get(key="geo-gse266604")
coll.ordered_artifacts.df() # the 2 members, ordered
# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]
# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()} Member datasets · 2
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