Collections / Spatial Transcriptomics identifies Prosaposin (PSAP) as a Novel Therapeutic Vulnerability in Pulmonary Sarcoidosis

Spatial Transcriptomics identifies Prosaposin (PSAP) as a Novel Therapeutic Vulnerability in Pulmonary Sarcoidosis

Sarcoidosis is a chronic inflammatory disorder characterized by the presence of tiny collections of immune cells known as granulomas. An incomplete understanding of etiology and immune-pathologic pathways have limited the development of quality biomarkers and novel targeted therapies. We found a Fsp1-Cre mediated TSC1/2 deletion mice unexpectedly led to development of a disease state, which was identified and characterized by spatial transcriptomics and single-cell RNA sequencing, similar to sarcoidosis. Notably, we identified CCL24 as a novel key chemotactic regulator in this model of sarcoidosis and found decreased CCL24 in the sarcoid group, thus translating our model and hypothesis to the human form of the disease. Intriguingly, we found that CCL24 and azithromycin significantly blocked the progression of granuloma formation in this model. Our findings not only improve an integrated understanding of the progression of sarcoidosis but also provide the basis for developing novel potential clinical interventions in sarcoidosis therapeutics.

Datasets4
Size~70 MB
AssayVisium
Samplehuman · lung
KindComparison
www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE262998 ↗
Python · lamindb
import lamindb as ln
import spatialdata as sd

coll = ln.Collection.get(key="geo-gse262998")
coll.ordered_artifacts.df()                 # the 4 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]

# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()}
Open in Vitessce
Visium
Human lung
GSM8182906
human lung sarcoidosis 13 MB 1,051 obs silver H&E
TechnologyVisium
Organismhuman
Tissuelung
Conditionsarcoidosis
Size13 MB
Obs1,051
silver H&E Open in Vitessce
Visium
Human lung
GSM8182905
human lung sarcoidosis 35 MB 1,859 obs silver H&E
TechnologyVisium
Organismhuman
Tissuelung
Conditionsarcoidosis
Size35 MB
Obs1,859
silver H&E
Open in Vitessce
Visium
Human lung
GSM8182907
human lung sarcoidosis 11 MB 1,642 obs silver H&E
TechnologyVisium
Organismhuman
Tissuelung
Conditionsarcoidosis
Size11 MB
Obs1,642
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human lung
GSM8182904
human lung sarcoidosis 11 MB 660 obs silver H&E
TechnologyVisium
Organismhuman
Tissuelung
Conditionsarcoidosis
Size11 MB
Obs660
silver H&E Open in Vitessce

Cite this collection

No linked publication found — please cite the data source.