Collections / Neuromodulatory co-expression in cardiac vagal motor neurons of the Dorsal Motor Nucleus of the Vagus [spatial transcriptomics]

Neuromodulatory co-expression in cardiac vagal motor neurons of the Dorsal Motor Nucleus of the Vagus [spatial transcriptomics]

The activity of the cardiac vagal innervation is well known to be crucial to the maintenance of cardiac health, and to protect and recover the heart from injury. Only recently has this role been shown to depend on the activity of the underappreciated Dorsal Motor Nucleus of the Vagus (DMV). By combining neural tracing, transcriptomics, and 3D mapping in male and female Sprague Dawley rats we characterize cardiac-specific neuronal phenotypes in DMV. We find that the DMV cardiac-projecting neurons differentially express PACAP, CART, and synucleins, as well as evidence that they participate in neuromodulatory co-expression involving catecholamines. The significance of these findings is enhanced by previous knowledge of the role of PACAP at the heart and of the other neuromodulators in peripheral vagal targets.

Datasets8
Size~153 MB
AssayVisium
Samplerat · brainstem
KindOther
PMID:39171288 ↗
Python · lamindb
import lamindb as ln
import spatialdata as sd

coll = ln.Collection.get(key="geo-gse260847")
coll.ordered_artifacts.df()                 # the 8 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]

# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()}
Visium
Rat brainstem
GSM8125592
rat brainstem 22 MB 1,792 obs bronze H&E
TechnologyVisium
Organismrat
Tissuebrainstem
Size22 MB
Obs1,792
bronze H&E
Open in Vitessce
Visium
Rat brainstem
GSM8125595
rat brainstem 18 MB 2,084 obs bronze H&E
TechnologyVisium
Organismrat
Tissuebrainstem
Size18 MB
Obs2,084
Magnificationother · 3.526 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Rat brainstem
GSM8125593
rat brainstem 18 MB 1,984 obs bronze H&E
TechnologyVisium
Organismrat
Tissuebrainstem
Size18 MB
Obs1,984
Magnificationother · 3.417 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Rat brainstem
GSM8125598
rat brainstem 15 MB 2,291 obs bronze H&E
TechnologyVisium
Organismrat
Tissuebrainstem
Size15 MB
Obs2,291
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Rat brainstem
GSM8125597
rat brainstem 24 MB 2,132 obs bronze H&E
TechnologyVisium
Organismrat
Tissuebrainstem
Size24 MB
Obs2,132
Magnificationother · 3.460 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Rat brainstem
GSM8125594
rat brainstem 19 MB 1,723 obs bronze H&E
TechnologyVisium
Organismrat
Tissuebrainstem
Size19 MB
Obs1,723
Magnificationother · 3.421 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Rat brainstem
GSM8125596
rat brainstem 19 MB 2,182 obs bronze H&E
TechnologyVisium
Organismrat
Tissuebrainstem
Size19 MB
Obs2,182
Magnificationother · 3.547 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Rat brainstem
GSM8125599
rat brainstem 18 MB 2,199 obs bronze H&E
TechnologyVisium
Organismrat
Tissuebrainstem
Size18 MB
Obs2,199
Magnificationother · 3.680 µm/px
bronze H&E Open in Vitessce

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