Collections / Mouse uterine gene expressions during peri-implantation period

Mouse uterine gene expressions during peri-implantation period

The mouse uterine gene expressions during peri-implantation period at pregnancy day 4 and 6 was investigated by Visium spatial transcriptome.

Datasets3
Size~39 MB
AssayVisium
Samplemouse · uterus
KindOther
PMID:39377223 ↗
Python · lamindb
import lamindb as ln
import spatialdata as sd

coll = ln.Collection.get(key="geo-gse253520")
coll.ordered_artifacts.df()                 # the 3 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]

# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()}
Open in Vitessce
Visium
Mouse uterus
GSM8022509
mouse uterus 9.5 MB 296 obs bronze H&E
TechnologyVisium
Organismmouse
Tissueuterus
Size9.5 MB
Obs296
Magnificationother · 3.620 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Mouse uterus
GSM8022510
mouse uterus 15 MB 502 obs bronze H&E
TechnologyVisium
Organismmouse
Tissueuterus
Size15 MB
Obs502
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Mouse uterus
GSM9191330
mouse uterus 14 MB 508 obs bronze H&E
TechnologyVisium
Organismmouse
Tissueuterus
Size14 MB
Obs508
Magnificationother · 3.621 µm/px
bronze H&E Open in Vitessce

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