Collections / Systems-based identification of the Hippo pathway for promoting fibrotic mesenchymal differentiation in systemic sclerosis

Systems-based identification of the Hippo pathway for promoting fibrotic mesenchymal differentiation in systemic sclerosis

Systemic sclerosis (SSc) is a devastating autoimmune disease characterized by excessive production and accumulation of extracellular matrix, leading to fibrosis of skin and other internal organs. However, the main cellular participants in SSc skin fibrosis remain incompletely understood. Here using differentiation trajectories at a single cell level, we demonstrate a dual source of extracellular matrix deposition in SSc skin from both myofibroblasts and endothelial-to-mesenchymal-transitioning cells (EndoMT). We further define a central role of Hippo pathway effectors in differentiation and homeostasis of myofibroblast and EndoMT, respectively, and show that myofibroblasts and EndoMTs act as central communication hubs that drive key pro-fibrotic signaling pathways in SSc. Together, our data help characterize myofibroblast differentiation and EndoMT phenotypes in SSc skin, and hint that modulation of the Hippo pathway may contribute in reversing the pro-fibrotic phenotypes in myofibroblasts and EndoMTs.

Datasets4
Size~29 MB
AssayVisium
Samplehuman · skin of body
KindOther
PMID:38172207 ↗
Python · lamindb
import lamindb as ln
import spatialdata as sd

coll = ln.Collection.get(key="geo-gse249279")
coll.ordered_artifacts.df()                 # the 4 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]

# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()}
Open in Vitessce
Visium
Human skin of body
GSM7932819
human skin of body systemic sclerosis 6.5 MB 841 obs silver H&E
TechnologyVisium
Organismhuman
Tissueskin of body
Conditionsystemic sclerosis
Size6.5 MB
Obs841
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human skin of body
GSM7932820
human skin of body systemic sclerosis 6.6 MB 951 obs silver H&E
TechnologyVisium
Organismhuman
Tissueskin of body
Conditionsystemic sclerosis
Size6.6 MB
Obs951
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human skin of body
GSM7932818
human skin of body systemic sclerosis 8.4 MB 907 obs silver H&E
TechnologyVisium
Organismhuman
Tissueskin of body
Conditionsystemic sclerosis
Size8.4 MB
Obs907
silver H&E Open in Vitessce
Visium
Human skin of body
GSM7932817
human skin of body systemic sclerosis 7.5 MB 846 obs silver H&E
TechnologyVisium
Organismhuman
Tissueskin of body
Conditionsystemic sclerosis
Size7.5 MB
Obs846
silver H&E

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