Visium Mouse small intestine
GSM7106693
mouse small intestine 45 MB 4,190 obs silver H&E
TechnologyVisium
Organismmouse
Tissuesmall intestine
Obs4,190
silver H&E
Collections / Time-series spatial transcriptomic analysis of murine small intestine (SI) undergoing irradiation induced injury-repair with and without LXR activation
Time-series spatial transcriptomic analysis of murine small intestine (SI) undergoing irradiation induced injury-repair with and without LXR activation
To unbiasedly characterize the spatial transcriptomics landscape of murine small intestine damage and repair, we performed a time-series spatial transcriptional analysis of total small intestinal tissue during the course of irradiation damage from mice receiving standard diet. Additionally, to understand the role of LXR activation during damage and repair, we also collected small intestine tissues from mice fed with GW3965 diet.
Datasets4
Size~212 MB
AssayVisium
Samplemouse · small intestine
KindComparison
Download the whole collection
Python · lamindb
import lamindb as ln
import spatialdata as sd
coll = ln.Collection.get(key="geo-gse227742")
coll.ordered_artifacts.df() # the 4 members, ordered
# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]
# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()}Member datasets · 4
Visium 
Visium Mouse small intestine
GSM7106691
mouse small intestine 56 MB 4,585 obs silver H&E
TechnologyVisium
Organismmouse
Tissuesmall intestine
Obs4,585
silver H&E
Visium Mouse small intestine
GSM7106692
mouse small intestine 49 MB 4,881 obs silver H&E
TechnologyVisium
Organismmouse
Tissuesmall intestine
Obs4,881
silver H&E
Visium Mouse small intestine
GSM7106694
mouse small intestine 62 MB 4,859 obs silver H&E
TechnologyVisium
Organismmouse
Tissuesmall intestine
Obs4,859
silver H&E
Cite this collection
No linked publication found — please cite the data source.