Collections / The transcription factor Zfp281 serves redundantly with Zfp148 to support CD4+ T cell development and functions [Thymus Visium]

The transcription factor Zfp281 serves redundantly with Zfp148 to support CD4+ T cell development and functions [Thymus Visium]

The transcription factor Gata3 is essential both for CD4+ T cell development in the thymus and for the differentiation of Th2 cells, which mediate responses against extracellular parasites and contribute to asthma and allergies. Here we report that the transcription factor Zfp281, in part redundantly with its paralog Zfp148, cooperates with Gata3 to promote CD4+ T cell development and Th2 cell differentiation. Disruption of both factors in T cells resulted in reduced numbers of spleen CD4+ T cells. Additionally, we show that Zfp281 interacts with Gata3, and that Zfp281 binds to Th2 cytokine loci in Th2 cells. Finally, we found that Zfp148 and Zfp281 promote Th2 cytokine expression. During airway inflammation, Zfp148/281-deficient CD4+ T cells failed to express Th2 cytokines, despite normal expression of Gata3. Altogether our data identify Zfp148 and Zfp281 as essential for enabling Gata3 functions in both CD4+ T cell development and Th2 function.

Datasets6
Size~449 MB
AssayVisium
Samplemouse · thymus
KindComparison
PMID:37948511 ↗
Python · lamindb
import lamindb as ln
import spatialdata as sd

coll = ln.Collection.get(key="geo-gse227332")
coll.ordered_artifacts.df()                 # the 6 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]

# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()}
Open in Vitessce
Visium
Mouse thymus
GSM7097915
mouse thymus asthma 76 MB 2,692 obs silver H&E NCBI GEO policy
TechnologyVisium
Organismmouse
Tissuethymus
Conditionasthma
Size76 MB
Obs2,692
silver H&E NCBI GEO policy Open in Vitessce
Open in Vitessce
Visium
Mouse thymus
GSM7097914
mouse thymus asthma 67 MB 2,447 obs silver H&E NCBI GEO policy
TechnologyVisium
Organismmouse
Tissuethymus
Conditionasthma
Size67 MB
Obs2,447
silver H&E NCBI GEO policy Open in Vitessce
Open in Vitessce
Visium
Mouse thymus
GSM7097917
mouse thymus asthma 94 MB 3,189 obs silver H&E NCBI GEO policy
TechnologyVisium
Organismmouse
Tissuethymus
Conditionasthma
Size94 MB
Obs3,189
silver H&E NCBI GEO policy Open in Vitessce
Open in Vitessce
Visium
Mouse thymus
GSM7097916
mouse thymus asthma 52 MB 2,452 obs silver H&E NCBI GEO policy
TechnologyVisium
Organismmouse
Tissuethymus
Conditionasthma
Size52 MB
Obs2,452
silver H&E NCBI GEO policy Open in Vitessce
Open in Vitessce
Visium
Mouse thymus
GSM7097913
mouse thymus asthma 87 MB 2,830 obs silver H&E NCBI GEO policy
TechnologyVisium
Organismmouse
Tissuethymus
Conditionasthma
Size87 MB
Obs2,830
silver H&E NCBI GEO policy Open in Vitessce
Open in Vitessce
Visium
Mouse thymus
GSM7097918
mouse thymus asthma 74 MB 2,897 obs silver H&E NCBI GEO policy
TechnologyVisium
Organismmouse
Tissuethymus
Conditionasthma
Size74 MB
Obs2,897
silver H&E NCBI GEO policy Open in Vitessce

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