Collections / Visium spatial gene expression analyses of ovarian clear cell carcinoma (OCCC) [visium OCCC]
Visium spatial gene expression analyses of ovarian clear cell carcinoma (OCCC) [visium OCCC]
We attempted to determine histological localization of chemoresistant cancer subpopulation by performing spatial transcriptomics.
Datasets2
Size~37 MB
AssayVisium
Samplehuman · ovary
KindOther
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Python · lamindb
import lamindb as ln
import spatialdata as sd
coll = ln.Collection.get(key="geo-gse224335")
coll.ordered_artifacts.df() # the 2 members, ordered
# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]
# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()} Member datasets · 2
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