Collections / Cardiac reprogramming and Gata4 overexpression reduce fibrosis and improve diastolic dysfunction in heart failure with preserved ejection fraction [Visium]

Cardiac reprogramming and Gata4 overexpression reduce fibrosis and improve diastolic dysfunction in heart failure with preserved ejection fraction [Visium]

Fibrosis is important pathogenesis in heart failure with preserved ejection fraction (HFpEF). We previously reported that the overexpression of cardiac transcription factors, Mef2c/Gata4/Tbx5/Hand2 (MGTH) could directly reprogram cardiac fibroblasts (CFs) into induced CMs (iCMs) and reduce fibrosis. Here we show that in vivo cardiac reprogramming generated iCMs from resident CFs, improved cardiac function, and reversed fibrosis in HFpEF model using a novel transgenic mouse system. Visium revealed spatial information on changes in gene expression in HFpEF.

Datasets3
Size~84 MB
AssayVisium
Samplemouse · heart
KindComparison
PMID:39673349 ↗
Python · lamindb
import lamindb as ln
import spatialdata as sd

coll = ln.Collection.get(key="geo-gse218759")
coll.ordered_artifacts.df()                 # the 3 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]

# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()}
Open in Vitessce
Visium
Mouse heart
GSM6756178
mouse heart 26 MB 1,935 obs bronze H&E
TechnologyVisium
Organismmouse
Tissueheart
Size26 MB
Obs1,935
Magnificationother · 3.619 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Mouse heart
GSM6756180
mouse heart diastolic heart failure 36 MB 2,994 obs bronze H&E
TechnologyVisium
Organismmouse
Tissueheart
Conditiondiastolic heart failure
Size36 MB
Obs2,994
Magnificationother · 3.617 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Mouse heart
GSM6756179
mouse heart diastolic heart failure 22 MB 2,157 obs bronze H&E
TechnologyVisium
Organismmouse
Tissueheart
Conditiondiastolic heart failure
Size22 MB
Obs2,157
Magnificationother · 3.618 µm/px
bronze H&E Open in Vitessce

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