Collections / Liver metastases originating from 4 colorectal cancer patients (CRC-LM).

Liver metastases originating from 4 colorectal cancer patients (CRC-LM).

Using liver metastases from 4 colorectal cancer patients (CRC-LM), we explored one receptor: EGFR whose signaling triggers cell proliferation and is exacerbated in many tumors.

Datasets4
Size~86 MB
AssayVisium
Samplehuman · liver
KindOther
PMID:37144485 ↗
Python · lamindb
import lamindb as ln
import spatialdata as sd

coll = ln.Collection.get(key="geo-gse217414")
coll.ordered_artifacts.df()                 # the 4 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]

# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()}
Open in Vitessce
Visium
Human liver
GSM6716964
human liver colorectal cancer 16 MB 3,379 obs silver H&E
TechnologyVisium
Organismhuman
Tissueliver
Conditioncolorectal cancer
Size16 MB
Obs3,379
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human liver
GSM6716963
human liver colorectal cancer 25 MB 2,887 obs silver H&E
TechnologyVisium
Organismhuman
Tissueliver
Conditioncolorectal cancer
Size25 MB
Obs2,887
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human liver
GSM6716966
human liver colorectal cancer 14 MB 2,317 obs silver H&E
TechnologyVisium
Organismhuman
Tissueliver
Conditioncolorectal cancer
Size14 MB
Obs2,317
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human liver
GSM6716965
human liver colorectal cancer 31 MB 2,091 obs silver H&E
TechnologyVisium
Organismhuman
Tissueliver
Conditioncolorectal cancer
Size31 MB
Obs2,091
silver H&E Open in Vitessce

Cite this collection

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