Collections / Spatial transcriptomic profiling of Patient and Patient-corrected bioengineered vascular grafts.

Spatial transcriptomic profiling of Patient and Patient-corrected bioengineered vascular grafts.

Spatial transcriptomic profiling of two replicates of Patient and two replicates of Patient-corrected bioengineered vascular grafts harvested at week 8 post-implantation.

Datasets4
Size~28 MB
AssayVisium
Samplehuman · blood vessel
KindComparison
PMID:38718134 ↗
Python · lamindb
import lamindb as ln
import spatialdata as sd

coll = ln.Collection.get(key="geo-gse216992")
coll.ordered_artifacts.df()                 # the 4 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]

# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()}
Open in Vitessce
Visium
Human blood vessel
GSM6703214
human blood vessel Loeys-Dietz syndrome 11 MB 1,100 obs bronze H&E
TechnologyVisium
Organismhuman
Tissueblood vessel
ConditionLoeys-Dietz syndrome
Size11 MB
Obs1,100
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Human blood vessel
GSM6703215
human blood vessel Loeys-Dietz syndrome 6.6 MB 626 obs bronze H&E
TechnologyVisium
Organismhuman
Tissueblood vessel
ConditionLoeys-Dietz syndrome
Size6.6 MB
Obs626
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Human blood vessel
GSM6703213
human blood vessel Loeys-Dietz syndrome 6.2 MB 865 obs bronze H&E
TechnologyVisium
Organismhuman
Tissueblood vessel
ConditionLoeys-Dietz syndrome
Size6.2 MB
Obs865
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Human blood vessel
GSM6703212
human blood vessel Loeys-Dietz syndrome 4.2 MB 560 obs bronze H&E
TechnologyVisium
Organismhuman
Tissueblood vessel
ConditionLoeys-Dietz syndrome
Size4.2 MB
Obs560
bronze H&E Open in Vitessce

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