Collections / Defining the spatial-molecular map of fibrotic tendon healing and the drivers of Scleraxis-lineage cell fate and function

Defining the spatial-molecular map of fibrotic tendon healing and the drivers of Scleraxis-lineage cell fate and function

Spatial transcriptomic analysis of murine FDL tendons following acute injury and repair to evaluate spatiotemporal programming of tendon healing

Datasets8
Size~113 MB
AssayVisium
Samplemouse · tendon
KindTime course
PMID:36417854 ↗
Python · lamindb
import lamindb as ln
import spatialdata as sd

coll = ln.Collection.get(key="geo-gse216214")
coll.ordered_artifacts.df()                 # the 8 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]

# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()}
Open in Vitessce
Visium
Mouse tendon
GSM6661595
mouse tendon 11 MB 824 obs bronze H&E
TechnologyVisium
Organismmouse
Tissuetendon
Size11 MB
Obs824
Magnificationother · 3.847 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Mouse tendon
GSM6661597
mouse tendon 22 MB 1,495 obs bronze H&E
TechnologyVisium
Organismmouse
Tissuetendon
Size22 MB
Obs1,495
Magnificationother · 3.338 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Mouse tendon
GSM6661598
mouse tendon 22 MB 1,706 obs bronze H&E
TechnologyVisium
Organismmouse
Tissuetendon
Size22 MB
Obs1,706
Magnificationother · 3.352 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Mouse tendon
GSM6661599
mouse tendon 12 MB 875 obs bronze H&E
TechnologyVisium
Organismmouse
Tissuetendon
Size12 MB
Obs875
Magnificationother · 3.808 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Mouse tendon
GSM6661594
mouse tendon 13 MB 1,025 obs bronze H&E
TechnologyVisium
Organismmouse
Tissuetendon
Size13 MB
Obs1,025
Magnificationother · 3.341 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Mouse tendon
GSM6661593
mouse tendon 5.5 MB 650 obs bronze H&E
TechnologyVisium
Organismmouse
Tissuetendon
Size5.5 MB
Obs650
Magnificationother · 3.842 µm/px
bronze H&E Open in Vitessce
Visium
Mouse tendon
GSM6661596
mouse tendon 16 MB 1,017 obs bronze H&E
TechnologyVisium
Organismmouse
Tissuetendon
Size16 MB
Obs1,017
bronze H&E
Open in Vitessce
Visium
Mouse tendon
GSM6661600
mouse tendon 12 MB 873 obs bronze H&E
TechnologyVisium
Organismmouse
Tissuetendon
Size12 MB
Obs873
Magnificationother · 3.353 µm/px
bronze H&E Open in Vitessce

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