Collections / Spatiotemporal signaling underlies progressive vascular rarefaction in myocardial infarction

Spatiotemporal signaling underlies progressive vascular rarefaction in myocardial infarction

Therapeutic angiogenesis represents a promising avenue to revascularize the ischemic heart. Its limited success is partly due to our poor understanding of the cardiac stroma, specifically mural cells, and their response to ischemic injury. Here, we combine single-cell and positional transcriptomics to assess the behaviour of mural cells within the healing heart. In response to myocardial infarction, mural cells adopt an altered state closely associated with the infarct and retain a distinct lineage from fibroblasts. This response is concurrent with vascular rarefaction and reduced coverage by mural cells. Positional transcriptomics reveal that the infarcted heart is governed by regional-dependent and temporally regulated programs. While the remote zone acts as an important source of pro-angiogenic signals, the infarct zone is accentuated by chronic activation of anti-angiogenic, pro-fibrotic, and inflammatory cues. Together, our work unveils the spatiotemporal programs underlying cardiac repair and establishes an association between vascular deterioration and mural cell dysfunction.

Datasets4
Size~152 MB
AssayVisium
Samplemouse · cardiac ventricle
KindOther
PMID:38129410 ↗
Python · lamindb
import lamindb as ln
import spatialdata as sd

coll = ln.Collection.get(key="geo-gse206787")
coll.ordered_artifacts.df()                 # the 4 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]

# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()}
Open in Vitessce
Visium
Mouse cardiac ventricle
GSM7898099
mouse cardiac ventricle myocardial infarction 36 MB 948 obs silver H&E
TechnologyVisium
Organismmouse
Tissuecardiac ventricle
Conditionmyocardial infarction
Size36 MB
Obs948
silver H&E Open in Vitessce
Open in Vitessce
Visium
Mouse cardiac ventricle
GSM7898096
mouse cardiac ventricle 33 MB 591 obs silver H&E
TechnologyVisium
Organismmouse
Tissuecardiac ventricle
Size33 MB
Obs591
silver H&E Open in Vitessce
Open in Vitessce
Visium
Mouse cardiac ventricle
GSM7898097
mouse cardiac ventricle myocardial infarction 41 MB 1,068 obs silver H&E
TechnologyVisium
Organismmouse
Tissuecardiac ventricle
Conditionmyocardial infarction
Size41 MB
Obs1,068
silver H&E Open in Vitessce
Open in Vitessce
Visium
Mouse cardiac ventricle
GSM7898098
mouse cardiac ventricle myocardial infarction 42 MB 1,245 obs silver H&E
TechnologyVisium
Organismmouse
Tissuecardiac ventricle
Conditionmyocardial infarction
Size42 MB
Obs1,245
silver H&E Open in Vitessce

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