Collections / INPP5D limits plaque formation and glial reactivity in the APP/PS1 mouse model of Alzheimer’s disease

INPP5D limits plaque formation and glial reactivity in the APP/PS1 mouse model of Alzheimer’s disease

Spatial Transcriptomics (Visium) of 12 coronal brain sections from 6 months old female Inpp5dfl/fl/Cx3cr1CreER/+ crossed to APPKM670/671NL/PSEN1Δexon9 (PSAPP) mice and treated with either cornoil or tamoxifen (75 mg/kg) at 3 months of age for 5 consecutive days

Datasets12
Size~717 MB
AssayVisium
Samplemouse · brain
KindComparison
PMID:36448627 ↗
Python · lamindb
import lamindb as ln
import spatialdata as sd

coll = ln.Collection.get(key="geo-gse203424")
coll.ordered_artifacts.df()                 # the 12 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]

# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()}
Open in Vitessce
Visium
Mouse brain
GSM6171783
mouse brain 64 MB 3,025 obs bronze H&E
TechnologyVisium
Organismmouse
Tissuebrain
Size64 MB
Obs3,025
Magnificationother · 3.530 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Mouse brain
GSM6171782
mouse brain 48 MB 2,549 obs bronze H&E
TechnologyVisium
Organismmouse
Tissuebrain
Size48 MB
Obs2,549
Magnificationother · 3.532 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Mouse brain
GSM6171789
mouse brain Alzheimer disease 69 MB 3,078 obs bronze H&E
TechnologyVisium
Organismmouse
Tissuebrain
ConditionAlzheimer disease
Size69 MB
Obs3,078
Magnificationother · 3.531 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Mouse brain
GSM6171790
mouse brain 54 MB 2,647 obs bronze H&E
TechnologyVisium
Organismmouse
Tissuebrain
Size54 MB
Obs2,647
Magnificationother · 3.534 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Mouse brain
GSM6171787
mouse brain 71 MB 3,126 obs bronze H&E
TechnologyVisium
Organismmouse
Tissuebrain
Size71 MB
Obs3,126
Magnificationother · 3.530 µm/px
bronze H&E Open in Vitessce
Visium
Mouse brain
GSM6171793
mouse brain Alzheimer disease 52 MB 2,775 obs bronze H&E
TechnologyVisium
Organismmouse
Tissuebrain
ConditionAlzheimer disease
Size52 MB
Obs2,775
bronze H&E
Open in Vitessce
Visium
Mouse brain
GSM6171788
mouse brain Alzheimer disease 62 MB 2,601 obs bronze H&E
TechnologyVisium
Organismmouse
Tissuebrain
ConditionAlzheimer disease
Size62 MB
Obs2,601
Magnificationother · 3.533 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Mouse brain
GSM6171791
mouse brain 54 MB 2,731 obs bronze H&E
TechnologyVisium
Organismmouse
Tissuebrain
Size54 MB
Obs2,731
Magnificationother · 3.531 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Mouse brain
GSM6171786
mouse brain 58 MB 2,841 obs bronze H&E
TechnologyVisium
Organismmouse
Tissuebrain
Size58 MB
Obs2,841
Magnificationother · 3.532 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Mouse brain
GSM6171784
mouse brain Alzheimer disease 60 MB 2,731 obs bronze H&E
TechnologyVisium
Organismmouse
Tissuebrain
ConditionAlzheimer disease
Size60 MB
Obs2,731
Magnificationother · 3.533 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Mouse brain
GSM6171785
mouse brain Alzheimer disease 74 MB 3,513 obs bronze H&E
TechnologyVisium
Organismmouse
Tissuebrain
ConditionAlzheimer disease
Size74 MB
Obs3,513
Magnificationother · 3.531 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Mouse brain
GSM6171792
mouse brain Alzheimer disease 50 MB 2,416 obs bronze H&E
TechnologyVisium
Organismmouse
Tissuebrain
ConditionAlzheimer disease
Size50 MB
Obs2,416
Magnificationother · 3.320 µm/px
bronze H&E Open in Vitessce

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