Collections / Spatial transcriptome sequencing of primary nasopharyngeal carcinoma tissues
Spatial transcriptome sequencing of primary nasopharyngeal carcinoma tissues
Understanding of the spatial architecture of the primary NPC microenvironment as well as the co-localization and cell-cell communication between tumor and immune cells
Datasets2
Size~42 MB
AssayVisium
Samplehuman · nasopharynx
KindOther
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Python · lamindb
import lamindb as ln
import spatialdata as sd
coll = ln.Collection.get(key="geo-gse200310")
coll.ordered_artifacts.df() # the 2 members, ordered
# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]
# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()} Member datasets · 2
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