Collections / Spatial transcriptome sequencing of primary nasopharyngeal carcinoma tissues

Spatial transcriptome sequencing of primary nasopharyngeal carcinoma tissues

Understanding of the spatial architecture of the primary NPC microenvironment as well as the co-localization and cell-cell communication between tumor and immune cells

Datasets2
Size~42 MB
AssayVisium
Samplehuman · nasopharynx
KindOther
PMID:37024479 ↗
Python · lamindb
import lamindb as ln
import spatialdata as sd

coll = ln.Collection.get(key="geo-gse200310")
coll.ordered_artifacts.df()                 # the 2 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]

# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()}
Open in Vitessce
Visium
Human nasopharynx
GSM6030901
human nasopharynx nasopharyngeal carcinoma 20 MB 1,331 obs silver H&E
TechnologyVisium
Organismhuman
Tissuenasopharynx
Conditionnasopharyngeal carcinoma
Size20 MB
Obs1,331
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human nasopharynx
GSM6030902
human nasopharynx nasopharyngeal carcinoma 23 MB 1,089 obs silver H&E
TechnologyVisium
Organismhuman
Tissuenasopharynx
Conditionnasopharyngeal carcinoma
Size23 MB
Obs1,089
silver H&E Open in Vitessce

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