Collections / Spatial transcriptomics (Visium, 10x Genomics) data of Duchenne mouse models
Spatial transcriptomics (Visium, 10x Genomics) data of Duchenne mouse models
Quadricep sections of 10µm thick were placed on Visium spatial transcriptomics slide to obtain spatial datasets for these skeletal muscle sections
Datasets4
Size~48 MB
AssayVisium
Samplemouse · quadriceps femoris
KindComparison
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Python · lamindb
import lamindb as ln
import spatialdata as sd
coll = ln.Collection.get(key="geo-gse199659")
coll.ordered_artifacts.df() # the 4 members, ordered
# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]
# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()} Member datasets · 4
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