Collections / Spatial transcriptomics of the ageing ovary

Spatial transcriptomics of the ageing ovary

Ageing is a physiological process that manifests through progressive molecular, cellular, and systemic changes. Female reproductive potential gradually declines with age as oocyte quality and quantity decline. The purpose of this study was to better understand the spatiotemporal dynamics of the ovary.

Datasets4
Size~73 MB
AssayVisium
Samplemouse · ovary
KindOther
PMID:35996587 ↗
Python · lamindb
import lamindb as ln
import spatialdata as sd

coll = ln.Collection.get(key="geo-gse188257")
coll.ordered_artifacts.df()                 # the 4 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]

# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()}
Open in Vitessce
Visium
Mouse ovary
GSM5673399
mouse ovary 24 MB 1,415 obs bronze H&E
TechnologyVisium
Organismmouse
Tissueovary
Size24 MB
Obs1,415
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Mouse ovary
GSM5673400
mouse ovary 13 MB 814 obs bronze H&E
TechnologyVisium
Organismmouse
Tissueovary
Size13 MB
Obs814
Magnificationother · 11.498 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Mouse ovary
GSM5673398
mouse ovary 15 MB 841 obs bronze H&E
TechnologyVisium
Organismmouse
Tissueovary
Size15 MB
Obs841
Magnificationother · 11.192 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Mouse ovary
GSM5673401
mouse ovary 21 MB 1,193 obs bronze H&E
TechnologyVisium
Organismmouse
Tissueovary
Size21 MB
Obs1,193
Magnificationother · 11.114 µm/px
bronze H&E Open in Vitessce

Cite this collection

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