Collections / Visium Analysis of head and neck squamous carcinoma (HNSCC) spatial transcriptome evolution
Visium Analysis of head and neck squamous carcinoma (HNSCC) spatial transcriptome evolution
We collected HNSCC primary tumor sections from head and neck squamous cell carcinoma patients at the Taipei Veterans General Hospital (TVGH) for 10x Genomics Visium analysis.
Datasets8
Size~115 MB
AssayVisium
Samplehuman · craniocervical region
KindComparison
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Python · lamindb
import lamindb as ln
import spatialdata as sd
coll = ln.Collection.get(key="geo-gse181300")
coll.ordered_artifacts.df() # the 8 members, ordered
# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]
# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()} Member datasets · 8
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