Collections / Spatial transcriptomics of human brain metastases
Spatial transcriptomics of human brain metastases
Spatial transcriptomics of six surgically-resected human brain metastasis samples
Datasets6
Size~113 MB
AssayVisium
Samplehuman · brain
KindReplicates
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Python · lamindb
import lamindb as ln
import spatialdata as sd
coll = ln.Collection.get(key="geo-gse179572")
coll.ordered_artifacts.df() # the 6 members, ordered
# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]
# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()} Member datasets · 6
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