Collections / Neuroinflammatory astrocyte subtypes in the mouse brain [Visium]

Neuroinflammatory astrocyte subtypes in the mouse brain [Visium]

Spatial transcriptomics of saline- and LPS-injected Aldh1l1egfp mice 24 h after injection

Datasets6
Size~319 MB
AssayVisium
Samplemouse · brain
KindComparison
PMID:34413515 ↗
Python · lamindb
import lamindb as ln
import spatialdata as sd

coll = ln.Collection.get(key="geo-gse165098")
coll.ordered_artifacts.df()                 # the 6 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]

# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()}
Open in Vitessce
Visium
Mouse brain
GSM5026148
mouse brain 52 MB 2,157 obs bronze H&E
TechnologyVisium
Organismmouse
Tissuebrain
Size52 MB
Obs2,157
Magnificationother · 3.532 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Mouse brain
GSM5026146
mouse brain 55 MB 2,728 obs bronze H&E
TechnologyVisium
Organismmouse
Tissuebrain
Size55 MB
Obs2,728
Magnificationother · 3.531 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Mouse brain
GSM5026149
mouse brain 58 MB 2,730 obs bronze H&E
TechnologyVisium
Organismmouse
Tissuebrain
Size58 MB
Obs2,730
Magnificationother · 3.530 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Mouse brain
GSM5026147
mouse brain 52 MB 2,419 obs bronze H&E
TechnologyVisium
Organismmouse
Tissuebrain
Size52 MB
Obs2,419
Magnificationother · 3.530 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Mouse brain
GSM5026144
mouse brain 53 MB 2,511 obs bronze H&E
TechnologyVisium
Organismmouse
Tissuebrain
Size53 MB
Obs2,511
Magnificationother · 3.532 µm/px
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Mouse brain
GSM5026145
mouse brain 50 MB 3,113 obs bronze H&E
TechnologyVisium
Organismmouse
Tissuebrain
Size50 MB
Obs3,113
Magnificationother · 3.531 µm/px
bronze H&E Open in Vitessce

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