Visium Mouse trunk
GSM4861203
mouse trunk 4.2 MB 222 obs bronze H&E
TechnologyVisium
Organismmouse
Tissuetrunk
Obs222
Magnificationother · 3.574 µm/px
bronze H&E
Collections / Single cell- Cluster-RNA seq and Spatial Transcriptomics from the trunk of mouse embryos of different genotypes (wild type, Pax2-GFP, Pax2-GFP; Gata3 knockout) and developmental stages (E8.75, E9.5, E11.5) [Spatial Transcriptomics]
Single cell- Cluster-RNA seq and Spatial Transcriptomics from the trunk of mouse embryos of different genotypes (wild type, Pax2-GFP, Pax2-GFP; Gata3 knockout) and developmental stages (E8.75, E9.5, E11.5) [Spatial Transcriptomics]
To study cell heterogeneity and state transitions in the developing urinary tract we performed spatial transcriptomics from the trunk of E9.5 Pax2GFP mouse embryos using the 10X Genomics Visium Spatial Gene Expression protocol
Datasets4
Size~16 MB
AssayVisium
Samplemouse · trunk
KindOther
Download the whole collection
Python · lamindb
import lamindb as ln
import spatialdata as sd
coll = ln.Collection.get(key="geo-gse160137")
coll.ordered_artifacts.df() # the 4 members, ordered
# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]
# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()}Member datasets · 4
Visium 
Visium Mouse trunk
GSM4861205
mouse trunk 3.4 MB 178 obs bronze H&E
TechnologyVisium
Organismmouse
Tissuetrunk
Obs178
Magnificationother · 3.557 µm/px
bronze H&E
Visium Mouse trunk
GSM4861204
mouse trunk 3.8 MB 192 obs bronze H&E
TechnologyVisium
Organismmouse
Tissuetrunk
Obs192
Magnificationother · 3.552 µm/px
bronze H&E
Visium Mouse trunk
GSM4861202
mouse trunk 4.9 MB 198 obs bronze H&E
TechnologyVisium
Organismmouse
Tissuetrunk
Obs198
Magnificationother · 3.602 µm/px
bronze H&E
Cite this collection
No linked publication found — please cite the data source.