Collections / Spatiotemporal dynamics of molecular pathology in amyotrophic lateral sclerosis
Spatiotemporal dynamics of molecular pathology in amyotrophic lateral sclerosis
Datasets302
Size~26 GB
Assayspatial transcriptomics
Samplemouse · spinal cord
KindPublication
Download the whole collection
Python · lamindb
import lamindb as ln
import spatialdata as sd
coll = ln.Collection.get(key="doi-10.1126/science.aav9776")
coll.ordered_artifacts.df() # the 302 members, ordered
# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]
# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()} About the study
Spatiotemporal dynamics of molecular pathology in amyotrophic lateral sclerosis.
Read the abstract at the source →Member datasets · 302
Mouse spinal cord
NCBI220
mouse spinal cord amyotrophic lateral sclerosis 109 MB 204 obs silver H&E
Technologyspatial transcriptomics
Organismmouse
Tissuespinal cord
Conditionamyotrophic lateral sclerosis
Obs204
silver H&E
Mouse spinal cord
NCBI239
mouse spinal cord amyotrophic lateral sclerosis 101 MB 215 obs silver H&E
Technologyspatial transcriptomics
Organismmouse
Tissuespinal cord
Conditionamyotrophic lateral sclerosis
Obs215
Magnification20x · 0.551 µm/px
silver H&E
Mouse spinal cord
NCBI99
mouse spinal cord amyotrophic lateral sclerosis 83 MB 304 obs silver H&E
Technologyspatial transcriptomics
Organismmouse
Tissuespinal cord
Conditionamyotrophic lateral sclerosis
Obs304
silver H&E
Mouse spinal cord
NCBI173
mouse spinal cord amyotrophic lateral sclerosis 137 MB 295 obs silver H&E
Technologyspatial transcriptomics
Organismmouse
Tissuespinal cord
Conditionamyotrophic lateral sclerosis
Obs295
Magnification20x · 0.548 µm/px
silver H&E
Mouse spinal cord
NCBI124
mouse spinal cord amyotrophic lateral sclerosis 97 MB 336 obs silver H&E
Technologyspatial transcriptomics
Organismmouse
Tissuespinal cord
Conditionamyotrophic lateral sclerosis
Obs336
silver H&E
Mouse spinal cord
NCBI232
mouse spinal cord amyotrophic lateral sclerosis 104 MB 246 obs silver H&E
Technologyspatial transcriptomics
Organismmouse
Tissuespinal cord
Conditionamyotrophic lateral sclerosis
Obs246
Magnification20x · 0.568 µm/px
silver H&E
Mouse spinal cord
NCBI287
mouse spinal cord amyotrophic lateral sclerosis 112 MB 258 obs silver H&E
Technologyspatial transcriptomics
Organismmouse
Tissuespinal cord
Conditionamyotrophic lateral sclerosis
Obs258
silver H&E
Mouse spinal cord
NCBI304
mouse spinal cord amyotrophic lateral sclerosis 80 MB 87 obs silver H&E
Technologyspatial transcriptomics
Organismmouse
Tissuespinal cord
Conditionamyotrophic lateral sclerosis
Obs87
silver H&E
Cite this collection
doi.org/10.1126/science.aav9776 ↗ BibTeX
@article{Maniatis_2019,
title = {Spatiotemporal dynamics of molecular pathology in amyotrophic lateral sclerosis},
volume = {364},
ISSN = {1095-9203},
url = {http://dx.doi.org/10.1126/science.aav9776},
DOI = {10.1126/science.aav9776},
number = {6435},
journal = {Science},
publisher = {American Association for the Advancement of Science (AAAS)},
author = {Maniatis, Silas and Äijö, Tarmo and Vickovic, Sanja and Braine, Catherine and Kang, Kristy and Mollbrink, Annelie and Fagegaltier, Delphine and Andrusivová, Žaneta and Saarenpää, Sami and Saiz-Castro, Gonzalo and Cuevas, Miguel and Watters, Aaron and Lundeberg, Joakim and Bonneau, Richard and Phatnani, Hemali},
year = {2019},
month = Apr,
pages = {89–93}
}