Collections / A single-cell transcriptomic analysis of endometriosis

A single-cell transcriptomic analysis of endometriosis

Datasets2
Size~1.1 GB
AssayVisium
Samplehuman · uterus
KindPublication
10.1038/s41588-022-01254-1 ↗
Download the whole collection
Python · lamindb 
import lamindb as ln
import spatialdata as sd

coll = ln.Collection.get(key="doi-10.1038/s41588-022-01254-1")
coll.ordered_artifacts.df()                 # the 2 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]

# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()}
About the study

Single-cell transcriptomic analysis of endometriosis.

Read the abstract at the source →
Member datasets · 2
Open in Vitessce
Visium
Human uterus
NCBI690
human uterus endometriosis 569 MB 1,960 obs silver H&E
TechnologyVisium
Organismhuman
Tissueuterus
Conditionendometriosis
Size569 MB
Obs1,960
Magnification20x · 0.503 µm/px
silver H&E Open in Vitessce
Open in Vitessce
Visium
Human uterus
NCBI691
human uterus endometriosis 512 MB 1,388 obs silver H&E
TechnologyVisium
Organismhuman
Tissueuterus
Conditionendometriosis
Size512 MB
Obs1,388
Magnification20x · 0.504 µm/px
silver H&E Open in Vitessce

Cite this collection

doi.org/10.1038/s41588-022-01254-1 ↗
BibTeX 
@article{Fonseca_2023,
  title = {Single-cell transcriptomic analysis of endometriosis},
  volume = {55},
  ISSN = {1546-1718},
  url = {http://dx.doi.org/10.1038/s41588-022-01254-1},
  DOI = {10.1038/s41588-022-01254-1},
  number = {2},
  journal = {Nature Genetics},
  publisher = {Springer Science and Business Media LLC},
  author = {Fonseca, Marcos A. S. and Haro, Marcela and Wright, Kelly N. and Lin, Xianzhi and Abbasi, Forough and Sun, Jennifer and Hernandez, Lourdes and Orr, Natasha L. and Hong, Jooyoon and Choi-Kuaea, Yunhee and Maluf, Horacio M. and Balzer, Bonnie L. and Fishburn, Aaron and Hickey, Ryan and Cass, Ilana and Goodridge, Helen S. and Truong, Mireille and Wang, Yemin and Pisarska, Margareta D. and Dinh, Huy Q. and EL-Naggar, Amal and Huntsman, David G. and Anglesio, Michael S. and Goodman, Marc T. and Medeiros, Fabiola and Siedhoff, Matthew and Lawrenson, Kate},
  year = {2023},
  month = Jan,
  pages = {255–267}
}