Collections / A spatiotemporal organ-wide gene expression and cell atlas of the developing human heart

A spatiotemporal organ-wide gene expression and cell atlas of the developing human heart

Datasets19
Size~2.9 GB
Assayspatial transcriptomics
Samplehuman · heart
KindComparison
10.1016/j.cell.2019.11.025 ↗
Download the whole collection
Python · lamindb 
import lamindb as ln
import spatialdata as sd

coll = ln.Collection.get(key="doi-10.1016/j.cell.2019.11.025")
coll.ordered_artifacts.df()                 # the 19 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]

# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()}
About the study

A Spatiotemporal Organ-Wide Gene Expression and Cell Atlas of the Developing Human Heart.

Read the abstract at the source →
Member datasets · 19
Open in Vitessce
spatial transcriptomics
Human heart
SPA34
human heart 194 MB 242 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissueheart
Size194 MB
Obs242
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human heart
SPA31
human heart 199 MB 198 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissueheart
Size199 MB
Obs198
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human heart
SPA32
human heart 191 MB 226 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissueheart
Size191 MB
Obs226
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human heart
SPA42
human heart 123 MB 159 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissueheart
Size123 MB
Obs159
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human heart
SPA46
human heart 213 MB 69 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissueheart
Size213 MB
Obs69
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human heart
SPA43
human heart 106 MB 104 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissueheart
Size106 MB
Obs104
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human heart
SPA33
human heart 100 MB 243 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissueheart
Size100 MB
Obs243
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human heart
SPA45
human heart 126 MB 55 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissueheart
Size126 MB
Obs55
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human heart
SPA47
human heart 140 MB 59 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissueheart
Size140 MB
Obs59
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human heart
SPA36
human heart 196 MB 180 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissueheart
Size196 MB
Obs180
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human heart
SPA48
human heart 155 MB 55 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissueheart
Size155 MB
Obs55
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human heart
SPA40
human heart 182 MB 214 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissueheart
Size182 MB
Obs214
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human heart
SPA38
human heart 194 MB 178 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissueheart
Size194 MB
Obs178
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human heart
SPA39
human heart 108 MB 209 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissueheart
Size108 MB
Obs209
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human heart
SPA44
human heart 140 MB 103 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissueheart
Size140 MB
Obs103
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human heart
SPA35
human heart 130 MB 238 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissueheart
Size130 MB
Obs238
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human heart
SPA41
human heart 170 MB 186 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissueheart
Size170 MB
Obs186
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human heart
SPA37
human heart 111 MB 182 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissueheart
Size111 MB
Obs182
silver H&E Open in Vitessce
Open in Vitessce
spatial transcriptomics
Human heart
SPA30
human heart 206 MB 211 obs silver H&E
Technologyspatial transcriptomics
Organismhuman
Tissueheart
Size206 MB
Obs211
silver H&E Open in Vitessce

Cite this collection

doi.org/10.1016/j.cell.2019.11.025 ↗
BibTeX 
@article{Asp_2019,
  title = {A Spatiotemporal Organ-Wide Gene Expression and Cell Atlas of the Developing Human Heart},
  volume = {179},
  ISSN = {0092-8674},
  url = {http://dx.doi.org/10.1016/j.cell.2019.11.025},
  DOI = {10.1016/j.cell.2019.11.025},
  number = {7},
  journal = {Cell},
  publisher = {Elsevier BV},
  author = {Asp, Michaela and Giacomello, Stefania and Larsson, Ludvig and Wu, Chenglin and Fürth, Daniel and Qian, Xiaoyan and Wärdell, Eva and Custodio, Joaquin and Reimegård, Johan and Salmén, Fredrik and Österholm, Cecilia and Ståhl, Patrik L. and Sundström, Erik and Åkesson, Elisabet and Bergmann, Olaf and Bienko, Magda and Månsson-Broberg, Agneta and Nilsson, Mats and Sylvén, Christer and Lundeberg, Joakim},
  year = {2019},
  month = Dec,
  pages = {1647–1660.e19}
}