Collections / Zika virus co-opts miRNA networks to persist in placental microenvironments detected by spatial transcriptomics [visium]

Zika virus co-opts miRNA networks to persist in placental microenvironments detected by spatial transcriptomics [visium]

Datasets8
Size~1.0 GB
AssayVisium
Samplemouse · multiple
KindComparison
10.1016/j.ajog.2023.08.012 ↗
Download the whole collection
Python · lamindb 
import lamindb as ln
import spatialdata as sd

coll = ln.Collection.get(key="doi-10.1016/j.ajog.2023.08.012")
coll.ordered_artifacts.df()                 # the 8 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]

# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()}
About the study

Zika virus co-opts microRNA networks to persist in placental niches detected by spatial transcriptomics.

Read the abstract at the source →
Member datasets · 8
Open in Vitessce
Visium
Mouse uterus
NCBI790
mouse uterus 170 MB H&E
TechnologyVisium
Organismmouse
Tissueuterus
Size170 MB
H&E Open in Vitessce
Open in Vitessce
Visium
Mouse uterus
NCBI825
mouse uterus Zika virus infectious disease 89 MB 1,159 obs silver H&E
TechnologyVisium
Organismmouse
Tissueuterus
ConditionZika virus infectious disease
Size89 MB
Obs1,159
silver H&E Open in Vitessce
Open in Vitessce
Visium
Mouse uterus
NCBI822
mouse uterus Zika virus infectious disease 80 MB 706 obs silver H&E
TechnologyVisium
Organismmouse
Tissueuterus
ConditionZika virus infectious disease
Size80 MB
Obs706
silver H&E Open in Vitessce
Open in Vitessce
Visium
Mouse uterus
NCBI823
mouse uterus 81 MB 875 obs bronze H&E
TechnologyVisium
Organismmouse
Tissueuterus
Size81 MB
Obs875
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Mouse uterus
NCBI788
mouse uterus Zika virus infectious disease 171 MB 1,182 obs silver H&E
TechnologyVisium
Organismmouse
Tissueuterus
ConditionZika virus infectious disease
Size171 MB
Obs1,182
silver H&E Open in Vitessce
Open in Vitessce
Visium
Mouse placenta
NCBI791
mouse placenta Zika virus infectious disease 129 MB 429 obs silver H&E
TechnologyVisium
Organismmouse
Tissueplacenta
ConditionZika virus infectious disease
Size129 MB
Obs429
silver H&E Open in Vitessce
Open in Vitessce
Visium
Mouse uterus
NCBI824
mouse uterus Zika virus infectious disease 113 MB 1,709 obs silver H&E
TechnologyVisium
Organismmouse
Tissueuterus
ConditionZika virus infectious disease
Size113 MB
Obs1,709
silver H&E Open in Vitessce
Open in Vitessce
Visium
Mouse uterus
NCBI789
mouse uterus 209 MB 2,302 obs bronze H&E
TechnologyVisium
Organismmouse
Tissueuterus
Size209 MB
Obs2,302
bronze H&E Open in Vitessce

Cite this collection

doi.org/10.1016/j.ajog.2023.08.012 ↗
BibTeX 
@article{Barrozo_2024,
  title = {Zika virus co-opts microRNA networks to persist in placental niches detected by spatial transcriptomics},
  volume = {230},
  ISSN = {0002-9378},
  url = {http://dx.doi.org/10.1016/j.ajog.2023.08.012},
  DOI = {10.1016/j.ajog.2023.08.012},
  number = {2},
  journal = {American Journal of Obstetrics and Gynecology},
  publisher = {Elsevier BV},
  author = {Barrozo, Enrico R. and Seferovic, Maxim D. and Hamilton, Mark P. and Moorshead, David N. and Jochum, Michael D. and Do, Trang and O’Neil, Derek S. and Suter, Melissa A. and Aagaard, Kjersti M.},
  year = {2024},
  month = Feb,
  pages = {251.e1–251.e17}
}