Collections / 10x-xenium-ffpe-human-breast-biomarkers

10x-xenium-ffpe-human-breast-biomarkers

Datasets12
Size~119 GB
Assay10x Xenium
Samplehuman · breast
KindOther
Python · lamindb
import lamindb as ln
import spatialdata as sd

coll = ln.Collection.get(key="10x-xenium-ffpe-human-breast-biomarkers")
coll.ordered_artifacts.df()                 # the 12 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]

# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()}
Open in Vitessce
10x Xenium
Human breast
xenium-ffpe-human-breast-biomarkers__human-breast-biomarkers-s3-bot
human breast 4.3 GB 150,145 obs silver H&E
Technology10x Xenium
Organismhuman
Tissuebreast
Size4.3 GB
Obs150,145
Magnification40x · 0.009 µm/px
silver H&E Open in Vitessce
Open in Vitessce
10x Xenium
Human breast
xenium-ffpe-human-breast-biomarkers__human-breast-biomarkers-s4-bot
human breast 7.4 GB 201,955 obs silver H&E
Technology10x Xenium
Organismhuman
Tissuebreast
Size7.4 GB
Obs201,955
Magnification40x · 0.008 µm/px
silver H&E Open in Vitessce
Open in Vitessce
10x Xenium
Human breast
xenium-ffpe-human-breast-biomarkers__human-breast-biomarkers-s1-mid
human breast 12 GB 375,529 obs silver H&E
Technology10x Xenium
Organismhuman
Tissuebreast
Size12 GB
Obs375,529
Magnification40x · 0.010 µm/px
silver H&E Open in Vitessce
Open in Vitessce
10x Xenium
Human breast
xenium-ffpe-human-breast-biomarkers__human-breast-biomarkers-s1-top
human breast 7.7 GB 209,467 obs silver H&E
Technology10x Xenium
Organismhuman
Tissuebreast
Size7.7 GB
Obs209,467
Magnification40x · 0.010 µm/px
silver H&E Open in Vitessce
Open in Vitessce
10x Xenium
Human breast
xenium-ffpe-human-breast-biomarkers__human-breast-biomarkers-s4-top
human breast 8.1 GB 192,898 obs silver H&E
Technology10x Xenium
Organismhuman
Tissuebreast
Size8.1 GB
Obs192,898
Magnification40x · 0.008 µm/px
silver H&E Open in Vitessce
Open in Vitessce
10x Xenium
Human breast
xenium-ffpe-human-breast-biomarkers__human-breast-biomarkers-s3-top
human breast 12 GB 308,531 obs silver H&E
Technology10x Xenium
Organismhuman
Tissuebreast
Size12 GB
Obs308,531
Magnification40x · 0.009 µm/px
silver H&E Open in Vitessce
Open in Vitessce
10x Xenium
Human breast
xenium-ffpe-human-breast-biomarkers__human-breast-biomarkers-s3-mid
human breast 14 GB 373,150 obs silver H&E
Technology10x Xenium
Organismhuman
Tissuebreast
Size14 GB
Obs373,150
Magnification40x · 0.009 µm/px
silver H&E Open in Vitessce
Open in Vitessce
10x Xenium
Human breast
xenium-ffpe-human-breast-biomarkers__human-breast-biomarkers-s2-bot
human breast 14 GB 358,519 obs silver H&E
Technology10x Xenium
Organismhuman
Tissuebreast
Size14 GB
Obs358,519
Magnification40x · 0.006 µm/px
silver H&E Open in Vitessce
Open in Vitessce
10x Xenium
Human breast
xenium-ffpe-human-breast-biomarkers__human-breast-biomarkers-s2-top
human breast 8.5 GB 301,854 obs silver H&E
Technology10x Xenium
Organismhuman
Tissuebreast
Size8.5 GB
Obs301,854
Magnification40x · 0.006 µm/px
silver H&E Open in Vitessce
Open in Vitessce
10x Xenium
Human breast
xenium-ffpe-human-breast-biomarkers__human-breast-biomarkers-s2-mid
human breast 9.6 GB 380,739 obs silver H&E
Technology10x Xenium
Organismhuman
Tissuebreast
Size9.6 GB
Obs380,739
Magnification40x · 0.007 µm/px
silver H&E Open in Vitessce
Open in Vitessce
10x Xenium
Human breast
xenium-ffpe-human-breast-biomarkers__human-breast-biomarkers-s1-bot
human breast 12 GB 254,480 obs silver H&E
Technology10x Xenium
Organismhuman
Tissuebreast
Size12 GB
Obs254,480
Magnification40x · 0.009 µm/px
silver H&E Open in Vitessce
Open in Vitessce
10x Xenium
Human breast
xenium-ffpe-human-breast-biomarkers__human-breast-biomarkers-s4-mid
human breast 9.9 GB 335,709 obs silver H&E
Technology10x Xenium
Organismhuman
Tissuebreast
Size9.9 GB
Obs335,709
Magnification40x · 0.008 µm/px
silver H&E Open in Vitessce