Collections / 10x-xenium-comparison-fresh-frozen-human-ovarian-cancer

10x-xenium-comparison-fresh-frozen-human-ovarian-cancer

Datasets2
Size~38 GB
Assay10x Xenium
Samplehuman · ovary
KindComparison
Python · lamindb
import lamindb as ln
import spatialdata as sd

coll = ln.Collection.get(key="10x-xenium-comparison-fresh-frozen-human-ovarian-cancer")
coll.ordered_artifacts.df()                 # the 2 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]

# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()}
Open in Vitessce
10x Xenium
Human ovary
xenium-comparison-fresh-frozen-human-ovarian-cancer__human-ovary-cancer-ff
human ovary ovarian cancer 17 GB 205,082 obs silver H&E
Technology10x Xenium
Organismhuman
Tissueovary
Conditionovarian cancer
Size17 GB
Obs205,082
Magnification40x · 0.004 µm/px
silver H&E Open in Vitessce
Open in Vitessce
10x Xenium
Human ovary
xenium-comparison-fresh-frozen-human-ovarian-cancer__prime-human-ovary-cancer-ff
human ovary ovarian cancer 21 GB 200,900 obs silver H&E
Technology10x Xenium
Organismhuman
Tissueovary
Conditionovarian cancer
Size21 GB
Obs200,900
Magnification40x · 0.005 µm/px
silver H&E Open in Vitessce