Collections / 10x-ffpe-human-pancreas-with-xenium-multimodal-cell-segmentation

10x-ffpe-human-pancreas-with-xenium-multimodal-cell-segmentation

Datasets1
Size~4.3 GB
Assay10x Xenium
Samplehuman · pancreas
KindOther
Python · lamindb
import lamindb as ln
import spatialdata as sd

coll = ln.Collection.get(key="10x-ffpe-human-pancreas-with-xenium-multimodal-cell-segmentation")
coll.ordered_artifacts.df()                 # the 1 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]

# …or load each straight into memory as a SpatialData object:
sdatas = {a.key: sd.read_zarr(a.cache()) for a in coll.ordered_artifacts.all()}
Open in Vitessce
10x Xenium
Human pancreas
ffpe-human-pancreas-with-xenium-multimodal-cell-segmentation-1-standard
human pancreas pancreatic cancer 4.3 GB 140,702 obs silver H&E
Technology10x Xenium
Organismhuman
Tissuepancreas
Conditionpancreatic cancer
Size4.3 GB
Obs140,702
Magnification40x · 0.003 µm/px
silver H&E Open in Vitessce